This is one of the best X38 board asus was offering. It has a lot of features you can play around in the bios. Especially in OC part. PLUS, ASUS has the most reputable service and technical support, so i think you should consider this one for your next upgrade.
1.Does this mean that E0 stepped will be compatible with all P5q-pro's regardless of BIOS and support for E0 is simply improved in 1004 BIOS?
Yes, its compatible and you should download the latest one P5Q PRO Formal BIOS 1406 release made on 10/06/2008.
2.Is there anyway of...
Have you checked the QVL list on the user guide yet? I was reading on that QVL list for your board, and i coudnt spot your memory.
Anyway, i will suggest you to RMA your board with ASUS based on your problem description. If B1 and B2 work for your RAM, then i am sure A1 and A2 would also work...
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