Really depends on what HS you are using. I just installed a Alpha PAL6035 on my machine. I had the fan blowing into the HS. I let it run for awhile and CPU temp climbed up to 53C according to ASUS Probe.
I then switched the fan around. It is now blowing out, away from the HS. My CPU temp has dropped down to 46C with SETI and Half Life running. I'm happy with it.
You mileage may vary.
jim