First, as a safety net, make sure your Buffer Underrun protection is on in the burning software (I'm SURE you have it).
But, you shouldn't need it with that system. You need to make sure all of your drives/IDE channels are set to DMA mode, otherwise your CPU is trying to handle all of the information being passed from drive to drive - bad idea. DMA is more of a hardware to hardware transfer.
To check in Win98SE:
1. Go to Device Manager (Win key + Pause/Break, click on Device Manager tab)
2. Click the plus sign next to CD-ROM
3. Double-Click on one of the CD-Roms (if there's more than one)
4. In the properties window that comes up, select the "Settings" tab
5. Make sure the check box by "DMA" is checked. If not, click there and check it - that's your problem.
6. Repeat this for all of the CD-Rom drives listed
If any of your CD-Rom drives are not set to DMA, then that one will lag the whole job any time it's involved. Sooooo, if your burner isn't set to DMA, then EVERY job will lag.